Whenever run autoconfig, will generate a directory 'MMDDhhmm' under $APPL_TOP/admin/SID_HOSTNAME/out. Inside the directory, there will be several files which autoconfig has taken a backup of existing one before making changes to that. And also create a file to restore named as 'restore.sh'. This script will do the copy of backup files to the original location and this has the effect to rolling back autoconfig run.
For example,
[applmgr@devtapps ]$ cd /apps/devtappl/admin/DEVT_devtapps/out/06111617/
[applmgr@devtapps 06111617]$restores.sh
Hope this helps !!
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